Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs564685 chr13:21846879 A/G 1.06E-8 109 16.2 13.1 0 KM Plot
LAML rs566364 chr13:21837583 T/C 2.24E-8 106 16.23 12.2 0 KM Plot
LAML rs567166 chr13:21837519 T/C 2.24E-8 106 16.23 12.2 0 KM Plot
LAML rs56781357 chr13:114922114 G/A 3.1E-5 111 15.23 19.28 2.55 KM Plot
LAML rs57044223 chr19:33920158 C/T 1.9E-5 111 16.77 10.67 3 KM Plot
LAML rs57237051 chr13:97465032 A/AAC 0.000103 110 13.1 23.3 7.07 KM Plot
LAML rs57334642 chr3:48666795 C/T 0.000106 111 15.73 11.68 0 KM Plot
LAML rs57655358 chr7:46241652 G/A 0.000118 111 15.7 9.63 0 KM Plot
LAML rs57855729 chr11:58082908 T/A 1.62E-5 111 21.27 8.17 5.1 KM Plot
LAML rs57940491 chr19:33919877 T/C 1.9E-5 111 16.77 10.67 3 KM Plot
LAML rs5815848 chr16:15978357 T/TTTTA 0.000171 110 16.23 13.1 0 KM Plot
LAML rs58188909 chr12:1950011 A/AC 0.00017 107 0 20.27 12.2 KM Plot
LAML rs5828313 chr19:48256785 AC/A 3.21E-7 108 5.1 21.87 15.17 KM Plot
LAML rs58467448 chr10:78960000 C/T 7.34E-5 111 13.15 18.78 0 KM Plot
LAML rs58519241 chr13:21845006 C/A 1.06E-8 109 16.2 13.1 0 KM Plot